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Neutrons

This tag is associated with 4 posts

Neutron structure and mechanistic investigations of DFPase

In a new article in the Journal Acta Crystallographica D we discuss comprehensively the neutron diffraction structure of DFPase and studies on the reaction mechanism of this enzyme. Three mechanisms proposed for DFPase will be discussed. This includes the original mechanism proposed in 2001 in which histidine residue 287 activates a water molecule for nucleophilic attack on the substrate’s phosphorus atom which itself is activated by coordination to the catalytic calcium ion. The second mechanism proposed in 2006 and currently view as the correct one, includes a covalent phospho-enzyme intermediate. The third mechanism which is discussed and refuted includes water as the nucleophile directly activated by coordination to the calcium.The article point out that besides important structural investigations (the neutron diffraction structure of DFPase yielded important and indispensable information) also mutagenesis and other mechanistic studies are required to derive enzyme reaction mechanisms.

Neutron Structure of the Enzyme DFPase

A new publication in the journal Proceedings of the National Academy of Sciences of the USA (PNAS) describes the neutron diffraction structure of the enzyme DFPase. Neutron diffraction allows the visualization of hydrogen atoms in protein structures and thus the determination of protonation states and orientations of solvent water molecules. The results of the study confirm the proposed reaction mechanism for DFPase and permit the directed introduction of modifications to the enzyme by mutagenesis to enhance both turnover rates and substrate diversity.